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<channel>
	<title>Arthur Lugtigheid</title>
	<atom:link href="http://arthur.is.verweg.com/feed/" rel="self" type="application/rss+xml" />
	<link>http://arthur.is.verweg.com</link>
	<description>Eruditio per Experimentis</description>
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			<item>
		<title>Link words and phrases</title>
		<link>http://arthur.is.verweg.com/2010/02/26/link-words-and-phrases/</link>
		<comments>http://arthur.is.verweg.com/2010/02/26/link-words-and-phrases/#comments</comments>
		<pubDate>Fri, 26 Feb 2010 16:06:03 +0000</pubDate>
		<dc:creator>Arthur</dc:creator>
				<category><![CDATA[Uncategorized]]></category>

		<guid isPermaLink="false">http://arthur.is.verweg.com/?p=107</guid>
		<description><![CDATA[Sometimes, when I get a writers block, it helps to look at a list of linking words or phrases. Also very useful when you tend to always use the same words over and over: this list can supply you with a synonymous word.
Feel free to use: A list of linking words or phrases.
]]></description>
			<content:encoded><![CDATA[<p>Sometimes, when I get a writers block, it helps to look at a list of linking words or phrases. Also very useful when you tend to always use the same words over and over: this list can supply you with a synonymous word.</p>
<p>Feel free to use: <a href="/linkwords.pdf" target="_blank">A list of linking words or phrases</a>.</p>
]]></content:encoded>
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		</item>
		<item>
		<title>Long time no see&#8230;</title>
		<link>http://arthur.is.verweg.com/2010/02/25/long-time-no-see/</link>
		<comments>http://arthur.is.verweg.com/2010/02/25/long-time-no-see/#comments</comments>
		<pubDate>Thu, 25 Feb 2010 11:09:17 +0000</pubDate>
		<dc:creator>Arthur</dc:creator>
				<category><![CDATA[Uncategorized]]></category>

		<guid isPermaLink="false">http://arthur.is.verweg.com/?p=103</guid>
		<description><![CDATA[It has been over a year since I have last updated this website and I guess it's about time I started updating my research description etc. I'm working hard to get my Ph.D. done (now in my last year) and we've got a really nice project on our hands at the moment that we're wrapping [...]]]></description>
			<content:encoded><![CDATA[<p>It has been over a year since I have last updated this website and I guess it's about time I started updating my research description etc. I'm working hard to get my Ph.D. done (now in my last year) and we've got a really nice project on our hands at the moment that we're wrapping up and that we will be presenting on VSS 2010 in Naples (FL) this year. Furthermore, I have been working on a new version of my staircase procedure for Matlab (drop me a line if you would like to try it).</p>
<p>So: I'm still alive. Still breathing (still healthy but still being checked, for those wondering). An update is coming soon. Really!</p>
]]></content:encoded>
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		<slash:comments>0</slash:comments>
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		<item>
		<title>Learning Python, my first steps</title>
		<link>http://arthur.is.verweg.com/2009/02/14/learning-python-my-first-steps/</link>
		<comments>http://arthur.is.verweg.com/2009/02/14/learning-python-my-first-steps/#comments</comments>
		<pubDate>Sat, 14 Feb 2009 13:40:08 +0000</pubDate>
		<dc:creator>Arthur</dc:creator>
				<category><![CDATA[Academic]]></category>
		<category><![CDATA[Python]]></category>

		<guid isPermaLink="false">http://arthur.is.verweg.com/?p=81</guid>
		<description><![CDATA[In yesterday's post, I advertised PsychoPy as an interesting alternative for the PsychToolbox, which runs on Matlab. In my work as a PhD student, I program my experiments in C# and OpenGL, using libraries that were written by my supervisor and our technician. However, I can't share any of my work with the community, which [...]]]></description>
			<content:encoded><![CDATA[<p>In yesterday's post, I advertised <a href="http://www.psychopy.org/home.php">PsychoPy</a> as an interesting alternative for the <a href="http://psychtoolbox.org/wikka.php?wakka=HomePage">PsychToolbox</a>, which runs on Matlab. In my work as a PhD student, I program my experiments in C# and OpenGL, using libraries that were written by my supervisor and our technician. However, I can't share any of my work with the community, which is something I'm quite keen on. Furthermore, my experiments will only run on Windows. So I think PsychoPy is interesting because it is free and platform independent but to get the best from <a href="http://www.psychopy.org/home.php">PsychoPy</a>, you need to know a thing or two about the Python programming language. So yesterday, I stepped into the world of Python development.</p>
<p>First impressions; not bad. It took me some time to find a good IDE for the Mac and to find out how to get additional libraries (and got stuck in getting rpy running). In the end I got everything up and running; I'm using IDLE for now and I've installed SciPy, NumPy, wxPython, PyGame and PyOpenGL. At this point I should mention that Jon has done a great job in creating a custom IDE that is included in the <a href="http://www.psychopy.org/home.php">PsychoPy</a> package, or at least it is on the mac version, and you can easily code and run your experiments in this environment. Furthermore, all the packages you would need for experiments are included in the package. But... I'm stubborn and like to take the hard route; if you want to get a kickstart, use Jon's IDE.</p>
<p>The Python language seems - at a first glance - great. It seems elegant and I've had no trouble understanding code sniplets. It handles strings much much better than matlab, and it looks like whatever you can do with Matlab, you can do with Python too (using NumPy and SciPy). I'm now working my way through some Python books to get the hang of the basics - will keep you updated.</p>
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		<item>
		<title>Psychophysics and PsychoPy</title>
		<link>http://arthur.is.verweg.com/2009/02/13/psychophysics-and-psychopy/</link>
		<comments>http://arthur.is.verweg.com/2009/02/13/psychophysics-and-psychopy/#comments</comments>
		<pubDate>Fri, 13 Feb 2009 22:37:31 +0000</pubDate>
		<dc:creator>Arthur</dc:creator>
				<category><![CDATA[Academic]]></category>
		<category><![CDATA[Python]]></category>

		<guid isPermaLink="false">http://arthur.is.verweg.com/?p=75</guid>
		<description><![CDATA[Today I met Jon Peirce, who is responsible for much - if not all - of the code in PsychoPy, which is a nice open-source package for creating visual stimuli and running psychophysical (or should I say PychoPysical?) experiments in Python. There's a number of reasons as to why psychopy is interesting for neuroscientists:

It's based [...]]]></description>
			<content:encoded><![CDATA[<p>Today I met <a href="http://www.psychology.nottingham.ac.uk/research/vision/jwp/">Jon Peirce</a>, who is responsible for much - if not all - of the code in <a href="http://www.psychopy.org/home.php">PsychoPy</a>, which is a nice<em> open-source</em> package for creating visual stimuli and running psychophysical (or should I say PychoPysical?) experiments in Python. There's a number of reasons as to why psychopy is interesting for neuroscientists:</p>
<ol>
<li>It's based on <strong>free</strong> libraries</li>
<li>It is platform independent</li>
<li>Python is a nice OO language</li>
<li>Did I mention it's <strong>free</strong>?</li>
<li>It works great with OpenGL</li>
</ol>
<p>I believe that software should be freely available and psychopy is exactly that; that means that you will not have to pay for Matlab licenses to use the PsychToolbox. Although a wonderful piece of software in its own right, the PsychToolbox requires researchers to have a license for Matlab, which can make it quite expensive. Furthermore, coding (or should I say: scripting) an experiment in Matlab can be somewhat "ugly" in my opinion. As far as I can tell, it's early days for PsychoPy, Jon told me there are about a 100 users at the moment. Hopefully more researchers will find their way to PsychoPy and hopefully some of them will be able to help expand it!</p>
<p>(ofcourse there are a couple of down sides of using PsychoPy; (1) installation of Python is not always straightforward, but see the .dmg for the mac which features everything you need to run PsychoPy; and (2) if you don't know the language you would have to learn it)</p>
]]></content:encoded>
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		<item>
		<title>New, improved staircase procedure in the making</title>
		<link>http://arthur.is.verweg.com/2008/10/18/new-adaptive-staircase-procedure/</link>
		<comments>http://arthur.is.verweg.com/2008/10/18/new-adaptive-staircase-procedure/#comments</comments>
		<pubDate>Sat, 18 Oct 2008 15:40:44 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[Academic]]></category>
		<category><![CDATA[Matlab]]></category>
		<category><![CDATA[Upcoming]]></category>

		<guid isPermaLink="false">http://arthur.is.verweg.com/?p=61</guid>
		<description><![CDATA[One of the reasons why people visit this website is my implementation of the Levitt 1971 adaptive staircase in Matlab. Apparently, there is a need for this kind of thing amongst researchers. That's why I've decided to reimplement the staircase procedure to include more functionality, such as:

the ability to run multiple interleaved staircases
more control of [...]]]></description>
			<content:encoded><![CDATA[<p>One of the reasons why people visit this website is <a href="http://arthur.is.verweg.com/projects/staircase/" target="_blank">my implementation of the Levitt 1971 adaptive staircase in Matlab</a>. Apparently, there is a need for this kind of thing amongst researchers. That's why I've decided to reimplement the staircase procedure to include more functionality, such as:</p>
<ol>
<li>the ability to run multiple interleaved staircases</li>
<li>more control of the stepsize</li>
</ol>
<p>I'm still in the process of programming, debugging and testing the code at the moment, but here's a sneak peak of what is to come:</p>
<p style="text-align: center;">
<p style="text-align: center;"><a href="http://arthur.is.verweg.com/-wordpress/wp-content/uploads/2008/10/do_sc_01.png"><img class="size-medium wp-image-62 aligncenter" style="border: 1px solid black;" title="do_sc_01" src="http://arthur.is.verweg.com/-wordpress/wp-content/uploads/2008/10/do_sc_01-300x225.png" alt="" width="300" height="225" />(click for larger image)<br />
</a></p>
<p style="text-align: left;">
<p style="text-align: left;">In the meantime, I've disabled the download for the old staircase procedure. If you want a copy, please drop me a line and I will send it to you asap.</p>
<p style="text-align: left;"><strong>Edit 06/02/2009: still in progress - please be patient</strong></p>
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		<title>Reading files with headers into matlab</title>
		<link>http://arthur.is.verweg.com/2008/07/02/reading-files-with-headers-into-matlab/</link>
		<comments>http://arthur.is.verweg.com/2008/07/02/reading-files-with-headers-into-matlab/#comments</comments>
		<pubDate>Wed, 02 Jul 2008 14:58:48 +0000</pubDate>
		<dc:creator>Arthur</dc:creator>
				<category><![CDATA[Matlab]]></category>

		<guid isPermaLink="false">http://arthur.is.verweg.com/?p=26</guid>
		<description><![CDATA[A very nice and quick way to read text files into the matlab workspace..]]></description>
			<content:encoded><![CDATA[<p>Here's a handy code sniplet that enables you to read a file with columns of data with headers into MATLAB:</p>
<pre class="matlab"><ol><li style="font-family: 'Courier New', Courier, monospace; color: black; font-weight: normal; font-style: normal;"><div style="font-family: 'Courier New', Courier, monospace; font-weight: normal;"><span style="color: #0000FF;">function</span> importfile<span style="color: #080;">&#40;</span>filename<span style="color: #080;">&#41;</span></div></li><li style="font-family: 'Courier New', Courier, monospace; color: black; font-weight: normal; font-style: normal;"><div style="font-family: 'Courier New', Courier, monospace; font-weight: normal;">&nbsp;</div></li><li style="font-family: 'Courier New', Courier, monospace; color: black; font-weight: normal; font-style: normal;"><div style="font-family: 'Courier New', Courier, monospace; font-weight: normal;"><span style="color: #228B22;">% import the file</span></div></li><li style="font-family: 'Courier New', Courier, monospace; color: black; font-weight: normal; font-style: normal;"><div style="font-family: 'Courier New', Courier, monospace; font-weight: normal;">newdata = importdata<span style="color: #080;">&#40;</span>filename<span style="color: #080;">&#41;</span>;</div></li><li style="font-family: 'Courier New', Courier, monospace; color: black; font-weight: normal; font-style: normal;"><div style="font-family: 'Courier New', Courier, monospace; font-weight: normal;">&nbsp;</div></li><li style="font-family: 'Courier New', Courier, monospace; color: black; font-weight: normal; font-style: normal;"><div style="font-family: 'Courier New', Courier, monospace; font-weight: normal;"><span style="color: #228B22;">% create new variables in the base workspace from these fields</span></div></li><li style="font-family: 'Courier New', Courier, monospace; color: black; font-weight: normal; font-style: normal;"><div style="font-family: 'Courier New', Courier, monospace; font-weight: normal;">vars = <a href="http://www.mathworks.com/access/helpdesk/help/techdoc/ref/fieldnames.html"><span style="color: #0000FF;">fieldnames</span></a><span style="color: #080;">&#40;</span>newdata<span style="color: #080;">&#41;</span>;</div></li><li style="font-family: 'Courier New', Courier, monospace; color: black; font-weight: normal; font-style: normal;"><div style="font-family: 'Courier New', Courier, monospace; font-weight: normal;"><span style="color: #0000FF;">for</span> <a href="http://www.mathworks.com/access/helpdesk/help/techdoc/ref/i.html"><span style="color: #0000FF;">i</span></a>=<span style="color: #33f;">1</span>:<a href="http://www.mathworks.com/access/helpdesk/help/techdoc/ref/length.html"><span style="color: #0000FF;">length</span></a><span style="color: #080;">&#40;</span>vars<span style="color: #080;">&#41;</span>,</div></li><li style="font-family: 'Courier New', Courier, monospace; color: black; font-weight: normal; font-style: normal;"><div style="font-family: 'Courier New', Courier, monospace; font-weight: normal;">    assignin<span style="color: #080;">&#40;</span>'<span style="color:#A020F0;">base</span>', vars<span style="color: #080;">&#123;</span><a href="http://www.mathworks.com/access/helpdesk/help/techdoc/ref/i.html"><span style="color: #0000FF;">i</span></a><span style="color: #080;">&#125;</span>, newdata.<span style=""><span style="color: #080;">&#40;</span>vars</span><span style="color: #080;">&#123;</span><a href="http://www.mathworks.com/access/helpdesk/help/techdoc/ref/i.html"><span style="color: #0000FF;">i</span></a><span style="color: #080;">&#125;</span><span style="color: #080;">&#41;</span><span style="color: #080;">&#41;</span>;</div></li><li style="font-family: 'Courier New', Courier, monospace; color: black; font-weight: normal; font-style: normal;"><div style="font-family: 'Courier New', Courier, monospace; font-weight: normal;"><span style="color: #0000FF;">end</span></div></li></ol></pre>
<p>This will give you three variables in your workspace:</p>
<ul>
<li>colheaders: a list of all the variable names, extracted from the header</li>
<li>data: a matrix with all your data in it</li>
<li>textdata: essentially the same thing as colheaders</li>
</ul>
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		<title>JANE: Journal Author Name Estimator</title>
		<link>http://arthur.is.verweg.com/2008/01/31/jane-journal-author-name-estimator/</link>
		<comments>http://arthur.is.verweg.com/2008/01/31/jane-journal-author-name-estimator/#comments</comments>
		<pubDate>Thu, 31 Jan 2008 22:22:07 +0000</pubDate>
		<dc:creator>Arthur</dc:creator>
				<category><![CDATA[Academic]]></category>

		<guid isPermaLink="false">http://arthur.is.verweg.com/2008/01/31/jane-journal-author-name-estimator/</guid>
		<description><![CDATA["Have you recently written a paper, but you're not sure to which journal you should submit it? Or are you an editor, and do you need to find reviewers for a particular paper? Jane can help!"
From: http://biosemantics.org/jane/ 
]]></description>
			<content:encoded><![CDATA[<p>"Have you recently written a paper, but you're not sure to which journal you should submit it? Or are you an editor, and do you need to find reviewers for a particular paper? Jane can help!"</p>
<p>From: <a href="http://biosemantics.org/jane/" title="JANE: Journal author name estimator">http://biosemantics.org/jane/ </a></p>
]]></content:encoded>
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		<item>
		<title>Some people have real problems..</title>
		<link>http://arthur.is.verweg.com/2008/01/15/some-people-have-real-problems/</link>
		<comments>http://arthur.is.verweg.com/2008/01/15/some-people-have-real-problems/#comments</comments>
		<pubDate>Tue, 15 Jan 2008 01:51:13 +0000</pubDate>
		<dc:creator>Arthur</dc:creator>
				<category><![CDATA[Music]]></category>

		<guid isPermaLink="false">http://arthur.is.verweg.com/2008/01/15/some-people-have-real-problems/</guid>
		<description><![CDATA[That's the title of the (for me) long awaited new CD of the wonderful singer Sia Furler. Some of you might know her from her excellent work for Zero 7 or maybe even from her previous album "Colour the small one". This new album certainly does not disappoint.. In fact.. it's great! Although I have [...]]]></description>
			<content:encoded><![CDATA[<p>That's the title of the (for me) long awaited new CD of the wonderful singer <a href="http://www.siamusic.net">Sia Furler</a>. Some of you might know her from her excellent work for Zero 7 or maybe even from her previous album "Colour the small one". This new album certainly does not disappoint.. In fact.. it's great! Although I have to admit it seems to be less electronic and more poppy than previous work. But hey, it works for me!</p>
<p>My favorites? "Electric Bird", "Day too soon", "Button" (the hidden track) and "The girl you lost to cocaine". So what are you waiting for? Go and get that album (or listen to <a href="http://www.amazon.com/Some-People-Have-Real-Problems/dp/B0010DJ1VA/ref=pd_bbs_sr_1?ie=UTF8&amp;s=music&amp;qid=1197653844&amp;sr=8-1" target="_blank">the previews on Amazon</a>).</p>
<p>Alternatively, watch the <a href="http://uk.youtube.com/results?search_query=sia+kcrw+2007">KCRW2007 live sessions</a> (big thanks to <a href="http://milov.nl">Milo</a> for the link).</p>
<p>Also, new CD by Goldfrapp incoming soon! W00t~? Oh the joy..</p>
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		<item>
		<title>Macbook Pro Wishlist</title>
		<link>http://arthur.is.verweg.com/2008/01/12/macbook-pro-wishlist/</link>
		<comments>http://arthur.is.verweg.com/2008/01/12/macbook-pro-wishlist/#comments</comments>
		<pubDate>Sat, 12 Jan 2008 11:51:58 +0000</pubDate>
		<dc:creator>Arthur</dc:creator>
				<category><![CDATA[Apple]]></category>
		<category><![CDATA[Personal]]></category>

		<guid isPermaLink="false">http://arthur.is.verweg.com/2008/01/12/macbook-pro-wishlist/</guid>
		<description><![CDATA[So, there's been a lot of rumors concerning the Apple Macbook Pro, which is due for renewal.  A lot of rumors and patent applications point in the direction of some sort of multi-touch integration - a technology already used by Apple in the iPod Touch and the iPhone. Other rumors point to a sub-notebook, [...]]]></description>
			<content:encoded><![CDATA[<p>So, there's been a lot of rumors concerning the Apple Macbook Pro, which is due for renewal.  A lot of rumors and patent applications point in the direction of some sort of multi-touch integration - a technology already used by Apple in the iPod Touch and the iPhone. Other rumors point to a sub-notebook, meaning they will probably reintroduce the 12-inch Macbook Pro and sacrifice the optical drive for a thiner model. Many people believe that these changes will be announced at the MacWorld 2008 convention this tuesday.</p>
<p>But I don't really care about all that.. For me, these new features would just be nice bonuses.. I work with OpenGL a lot and I just want to be able to do that on my laptop - something I think the Macbook Pro can do just fine. However, if I would have to make a list of upgrades, that list would be the following:</p>
<ol>
<li>Upgraded CPU (2.6 Penryn CPU's standard in new models, maybe?)</li>
<li>Upgraded video memory (512MB would be splendid)</li>
</ol>
<p>I'm gonna be disappointed if none of these make it in the new model. <strike>But then again, I'd buy a new MacBook Pro anyway...</strike></p>
<p>Fingers crossed and creditcard at the ready! <img src='http://arthur.is.verweg.com/-wordpress/wp-includes/images/smilies/icon_smile.gif' alt=':)' class='wp-smiley' /> </p>
<p><strong>Update</strong>: There's some new rumors on a new apple notebook called "MacBook Air" - a new model that apparently is completely wireless (or so people are suggesting). I'm not sure how it compares to the current models, but it doesn't make much sense to introduce a 3rd model now that they have a top-end and a lower-end model in production. Only 22 more hours, and we'll know, I guess...</p>
<p><strong>Post MWSF Update:</strong> Not a happy bunny. Not happy at all.</p>
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		<title>Looking back: 2007</title>
		<link>http://arthur.is.verweg.com/2007/12/21/looking-back-2007/</link>
		<comments>http://arthur.is.verweg.com/2007/12/21/looking-back-2007/#comments</comments>
		<pubDate>Fri, 21 Dec 2007 16:17:54 +0000</pubDate>
		<dc:creator>Arthur</dc:creator>
				<category><![CDATA[Academic]]></category>
		<category><![CDATA[Personal]]></category>

		<guid isPermaLink="false">http://arthur.is.verweg.com/2007/12/21/looking-back-2007/</guid>
		<description><![CDATA[I think I can safely say that 2007 was a very good year for me, especially in academic regards. I finished my master degree in psychology in September.  In April, I applied for a studentship for a PhD at the University of Birmingham, got accepted and started that this October! And as a consequence, [...]]]></description>
			<content:encoded><![CDATA[<p>I think I can safely say that 2007 was a very good year for me, especially in academic regards. I finished my master degree in psychology in September.  In April, I applied for a studentship for a PhD at the University of Birmingham, got accepted and started that this October! And as a consequence, I also moved from the Netherlands to the UK.</p>
<p>So far, I'm quite enjoying myself as a PhD student - it's hard work, but it's very rewarding and I get to work with some of the best people in the field. I'm quite eager to see what next year will bring me! As for new years resolutions, I'd think my main one would be to get my first article published or at the very least submitted. Furthermore, I want to visit conferences, meet new people, and talk about the research I'm doing. In that respect I think I'll be up for a treat next year!</p>
<p>But, enough science talk. Tomorrow I'll fly back home to the Netherlands and enjoy two weeks of "rest". Quite looking forward to seeing my parents and my cat Floris again. Leaves me one last thing to do: <strong>I'd like to wish everyone a very happy Christmas and all the best for the new year</strong>!</p>
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